Five Ways Your Gut Can Change Your Mood, for Better or Worse

It has long been theorised that the communities of bacteria living in our gut are able to exert a powerful influence over our mood and mental wellbeing. What was once just a theory, has in more recent years, gained scientific credibility through a growing body of clinical research that substantiates the claim.

close up image of woman's stomach with hands placed over belly button in heart shape

The term the ‘gut-brain axis’ or perhaps more accurately the ‘microbiome-gut-brain axis’ is used to describe the intricate interplay between the enteric nervous system of the gut (ENS), and the brain and central nervous system (CNS). The communication between the two is a bi-directional process, carried out either via hormones and peptides secreted by the ENS into the blood stream, or via the vagus nerve. The vagus nerve extends from the brain stem to the abdomen, and impacts a great deal of bodily functions, including heart rate, respiratory rate and digestion.  Perhaps surprisingly more than 80% of nerve fibres carried by the vagus nerve go from the gut to the brain1, rather than the other way around. This means that the gut sends far more information to the brain, than it receives, suggesting the importance of good gut health to our mental wellbeing.

Gut-Brain Axis Infographic

Animal models (typically using mice) have indicated that ‘communication’ between the gut microbiota and the brain involves the vagus nerve2.  This can be substantiated by the fact that the anxiolytic and anti-depressive effects gained when mice are fed certain strains of probiotic bacteria, are only present in laboratory animals that have their vagus nerve intact. Vagotomized mice do not exhibit the same anxiolytic or anti-depressive effects3 when given the same probiotic strains in their feed.

The exact signalling mechanisms used by the gut microbiota to influence mood are not yet fully understood. It is thought that many different methods could be involved, including:

  1. The stimulation of the innate immune system via structural components of the bacterial cell wall (such as lipopolysaccharides and other sugars)4. In certain situations, including dysbiosis of the gut, and increased intestinal permeability this can lead to excessive stimulation of the immune system. This over-stimulation can result in systemic and/or central nervous system inflammation, which impacts our mood via the Hypothalmic-Pituitary-Adrenal Axis (HPA), and the production of stress hormones such as cortisol.
  2. The initiation of ‘faulty’ responses of the adaptive immune system due to a cross-reaction between bacterial proteins and human antigens.  In response to the presence of specific microbes in the gut the adaptive immune system produces antibodies or other antigen-specific immune responses which can lead to auto-immune reactions and therefore dysregulation of the central nervous system5.
  3. The production of bacterial metabolites such as ammonia and D-lactate which are toxic to the nervous system. The build-up of these metabolites can cause inflammation and dysregulation of the nervous system. Ammonia specifically, is also known to alter the function of the blood–brain barrier, and impair brain synthesis of both serotonin and dopamine6. Excess ammonia (produced by the action of certain gut bacteria as they metabolise urea) can therefore affect our mental health and mood.
  4. The production of hormones and neurotransmitters by gut microbes. Bacteria are able to synthesise hormones and neurotransmitters that are identical to those produced by humans7. These impact the Hypothalmic-Pituitary-Adrenal Axis (HPA), and greatly affect both mood and cognition. This is looked at in more detail in the following section.
  5. The direct stimulation of afferent neurons within the enteric nervous system by gut microbes7. Afferent neurons are nerve cells which send signals to the brain via the vagus nerve. They can be excited by gut bacteria, causing nerve impulses to travel to the brain and CNS.

These various mechanisms enable our gut microbes to shape many aspects of brain health, and impact many different functions, such as our sleep, stress response, mood, memory and cognition.

An imbalance in our gut microbes, known as dysbiosis, has long been understood to be a factor in a wide range of digestive health disorders. With the improved understanding we now have of how our gut microbiota also impacts our mental health, it is perhaps not surprising that many digestive health conditions present with accompanying mental health symptoms. The results of a 2003 study8 found that 40% of IBS patients reported suffering from a mood disorder, which brings into greater focus the indisputable link between our gut microbiome and our mood.

Lifestyle factors that can disrupt the balance of the gut infographic

Gut Derived Hormones

The bacterial production of hormones and neurotransmitters is perhaps one of the better understood methods through which our gut microbiota is able to influence our brain and mood. As mentioned previously, gut microbes are able to synthesise many different hormones and neurotransmitters, which are structurally identical to our own.

Clinical research has determined that species from the Lactobacillus and Bifidobacterium genus of bacteria produce GABA; species from Candida, Streptococcus, Escherichia and Enterococcus produce serotonin; species from Escherichia, Bacillus, and Saccharomyces produce noradrenalin; those from the Bacillus genus produce dopamine; and species from the Lactobacillus genus produce acetylcholine9, 10, 11. Whilst all these neurotransmitters (and many others beside) play a role in behaviour regulation, those with the greatest impact on mood are: noradrenalin, serotonin, dopamine and acetylcholine.

Neurotransmitters are chemical substances that initiate the transmission of a nerve impulse from one neuron to the next. They relay sensory information to the brain, and allow for appropriate bodily responses to this information. An imbalance in neurotransmitter levels can lead to mood disorders and negative emotions, such as: stress, anxiety, depression. It is a delicate balance and each neurotransmitter impacts another. Together they control our mental state, including: mood, emotion, motivation, appetite, aggression and anxiety.

Depressed man holding his head in his hands.

The increasing scientific interest into the impact of the microbiome in regulating mood disorders has led to the identification of certain strains of probiotic bacteria that appear to lessen our physiologic response to external stressors. Certain strains have a ‘calming’ influence on the nervous system, allowing us to exit the ‘fight or flight’ state that is all too prevalent in modern times.

Two such strains are: Lactobacillus acidophilus Rosell-52 and Bifidobacterium longum Rosell-175, which have been tested in combination and shown to have a positive impact on mood.

A randomised, double blind, placebo-controlled trial12 took 55 healthy participants and divided them into two groups. One group were given a supplement containing the above mentioned probiotic combination, the other group received a placebo, for a period of thirty days. After the intervention period symptom severity was measured using various validated scales of anxiety, stress, depression and ability to ‘cope’. Findings showed that this two strain, probiotic combination significantly reduced the scores of anxiety, depression and stress. The researchers summarised that these two probiotic strains could have beneficial psychological effects in humans.

Diagram of a healthy gut

The Impact of Stress on the Gut

Everyone has experienced the sensation of a ‘churning’ gut when they are under stress, and intuitively we know that our digestion is most definitely affected by our emotions, but what is actually happening at a physiological level?

The major effects of stress on our gut physiology include:

  • Changes in gastrointestinal motility
  • Changes in gastrointestinal secretions
  • Increase in intestinal permeability
  • Reduction in the capacity of the intestinal mucosa to regenerate and repair
  • Reduction in mucosal blood flow
  • Increased visceral sensitivity and pain
  • Negative changes to the intestinal microbiota.

Stress signals are ‘received’ and ‘translated’ by mast cells (and other cells) of the immune system into the release of neurotransmitters and pro-inflammatory cytokines, which may profoundly affect gastrointestinal physiology. IBS is considered as a stress-sensitive disorder. It is thought that pro-inflammatory cytokines activate the HPA axis, triggering the release of cortisol and other stress hormones which negatively affect gut function.

Certain strains of probiotic bacteria have demonstrated an ability to reduce the common symptoms of IBS. One of the most researched strains for this condition is Lactobacillus acidophilus NCFM®.

In one trial of IBS patients13, 73% of study participants saw an improvement in bloating, and 62% of participants saw an improvement in abdominal pain after taking a probiotic supplement which included this specific strain.

Following on from this finding, the potential mechanism of action behind the pain-relieving effect of L.acidophilus NCFM® was determined in a later study14. The probiotic strain was shown to induce the expression of certain receptors, known as μ-opioid and cannabinoid receptors, in intestinal epithelial cells. This leads to an analgesic effect which is similar to that of the pain-killer morphine, and results in a measurable reduction of intestinal pain.

The Impact of Stress Beyond the Gut

The release of neurotransmitters and pro-inflammatory cytokines in response to chronic stress, also impacts our wider physiology. Our bodies are not ideally designed to deal with constant, on-going stress. The release of cortisol and adrenalin which accompanies a stressful event, is the same whether the stress trigger is physical or psychological. However the changes to our physiology that these stress hormones create, are not needed if there is no physical threat to our safety.

When the cause of our stress is psychological, we do not need extra energy to stay and fight a ‘physical’ threat, or to run from it. This results in stress hormones circulating in the body that are not needed.

Many changes occur within the body, in response to the release of stress hormones, including:

  • suppression of non-essential functions, such as digestion.
  • narrowing of arteries, forcing the blood to pump harder to aid our ‘fight or flight’ response
  • an increase in heart and respiratory rate
  • expansion of the airways to allow more oxygen into muscles
  • creation of glucose from glycogen to power the large skeletal muscles
  • a decrease in lymphocyte production (and other components of the immune system)
  • production of pro-inflammatory cytokines

The inflammatory cascade and low-level systemic inflammation that is initiated by long-term stress exacerbates many health conditions, including: rheumatoid arthritis15, cardiovascular disease and even depression16.

Elements surrounding gut health infographic

 What We Eat Changes How We Feel

This article has focussed mainly on the link between the gut and microbiome and the brain and central nervous system. Given how integral our gut health is to our mood and emotional state, it should come as no great surprise that the food that we eat can greatly change how we feel.

Armed with the understanding that our gut microflora is able to directly influence our emotions and mood both through the synthesis of certain neurotransmitters and other metabolites, and the presence of certain sugars on their cell wall, one approach to better mental health is to improve the health of our microbiome. Nutritional tools and dietary protocols for altering the gut microbiome therapeutically include:

  • Focussing predominantly on a low sugar and low refined carbohydrate diet, whilst increasing the amount of dietary fibre consumed. Following a low G.I/G.L diet appears to influence the type of microbes living in the gut17. Beneficial strains of bacteria favour the fermentation of non-digestible carbohydrates and fibre for their own energy requirements. Detrimental/pathogenic strains of bacteria flourish on a host diet that contains a plentiful supply of simple carbohydrates and sugars.
  • Including prebiotics in the diet. Many fruits and vegetables contain prebiotic fibre. Prebiotic fibres are a type of carbohydrate that are not broken down during the digestive process. Instead they reach the large intestine still intact, and here they act as a food source for our gut flora. Studies in recent years18 have shown that prebiotics have similar anxiolytic and antidepressant effects as probiotics as they also reduce stress-induced changes to the gut microbiome and stabilise levels of Bifidobacteria and Lactobacilli. Good dietary sources of prebiotics include: artichokes, bananas, garlic and onions.
  • Adding probiotics to the diet. Traditionally, most cultures throughout the world have consumed ‘friendly’ strains of bacteria in the form of fermented foods. These take many different forms, with some of the more common ones being: sauerkraut, kimchi, kombucha and live yoghurt. These foods should always be consumed ‘raw’ rather than pasteurised, as pasteurisation affects the beneficial bacteria in them.
  • Fermented foods are an excellent addition to a gut-friendly diet, however they do not provide the same ‘targetted’ support that probiotic supplements offer. Often it is not known which specific strains of bacteria a fermented food contains, which means that the unique benefits of the bacteria cannot be married up to an individual’s health complaint. One other drawback to fermented foods is that their strong flavour may put some people off. For these reasons many people find taking a probiotic supplement is an easier option.
  • When choosing a probiotic supplement it is important to remember that different strains of probiotic bacteria do different things. Where one strain may have compelling clinical evidence for, say, constipation another strain may be better utilised for bloating, for example. Always choose a product containing strains that are well researched and found to be appropriate for your specific health condition or symptom.

Gut Health Checklist

Other nutritional approaches to improving mood through diet (that don’t specifically target the gut flora) include:

  • Eating anti-inflammatory foods. Certain foods contain anti-inflammatory compounds, such as polyphenols, and essential fatty acids. Following a ‘Mediterranean’ style diet is often recommended for those with inflammatory health problems19. Foods that are known for their anti-inflammatory properties include: oily fish, avocados, olive oil, dark skinned berries, nuts and green leafy vegetables.  
  • Eating tryptophan rich foods. Tryptophan is an essential amino acid required for the synthesis of serotonin. Serotonin is a neurotransmitter that plays an important part in our emotional well-being. It is needed to regulate many functions in the body, including: digestion, cognition, sleep and mood.

The NHS Recommends Probiotics for Mental Health

The body of evidence supporting the use of probiotics within the remit of mental health is now compelling enough that the NHS has made reference to probiotics on one of its advice websites. The website called ‘Healthier Together’ is aimed at helping parents and young people manage common concerns and childhood health conditions.

One section of the website covers maternal mental health, and features an article entitled ‘Staying healthy in body and mind’.  In this article, the author mentions probiotics as a natural option to aid in the maintenance of good mental health. Found within the ‘Diet’ segment of the piece, the article emphasises the findings of recent research, which has identified the direct link between our gut and our brains, and how inflammation might be one precursor to depression. Probiotics were suggested as a way to help combat this, and the following recommendation was given:

“Taking supplementary probiotics with two or more live cultures (for example lactobacillus and bifidobacterium) can improve the integrity of the gut, thus preventing toxins entering the bloodstream.”

Young family together in kitchen with food preparation in progress.


Recent research has made clear the link between the populations of bacteria living in the gut, and our mental and emotional health. A healthy microbiome is able to support proper mood and cognition in a variety of different ways, including the synthesis of neurotransmitters, stimulation of both the innate and adaptive immune system, excitation of the vagus nerve, production of various chemical metabolites and the regulation of inflammatory and anti-inflammatory cytokines.

Based on this knowledge, it seems wise to consider the health of the digestive system and the microbiome when addressing any mental health disorder. After all, many psychological disorders present with accompanying digestive health symptoms, and conversely sufferers of gastrointestinal conditions often experience accompanying mental health symptoms. 

To support the health of the microbiome dietary interventions should be considered that include eliminating simple sugars, increasing dietary fibre, including sources of prebiotics and focussing on anti-inflammatory foods.

Targeted probiotic supplements can be taken to support the production of regulatory neurotransmitters, and reduce the physiologic response to external stressors. Two specific strains that have been shown to be beneficial for both anxiety and depression are: Lactobacillus acidophilus Rosell-52 and Bifidobacterium longum Rosell-175.

By recognising that no health condition exists in isolation, and that every body function impacts another, we can start to unravel the cause behind dis-ease and imbalance, rather than just treat the symptoms. By restoring optimum health to the microbiome research now shows that we can positively impact our emotions and mental well-being.



  1. Sigrid Breit, Aleksandra Kupferberg, Gerhard Rogler and Gregor Hasler. (March 2018). Vagus Nerve as Modulator of the Brain–Gut Axis in Psychiatric and Inflammatory Disorders. 
  2. Alcock J, Maley CC, Aktipis CA. (Oct 2014). Is eating behavior manipulated by the gastrointestinal microbiota? Evolutionary pressures and potential mechanisms. 
  3. Bravo JA, Forsythe P, Chew MV, Escaravage E, Savignac HM, Dinan TG, Bienenstock J, Cryan JF. (Sep 2011). Ingestion of Lactobacillus strain regulates emotional behavior and central GABA receptor expression in a mouse via the vagus nerve. Proc Natl Acad Sci U S A; 108(38):16050-5.
  4. Duerkop BA, Vaishnava S, Hooper LV.(Sept. 2009) Immune responses to the microbiota at the intestinal mucosal surface. J. Immunity. 18; 31(3):368-76.
  5. Hornig, M. (July 2013) The role of microbes and autoimmunity in the pathogenesis of neuropsychiatric illness. J. Curr Opin Rheumatol. 25(4):488-795
  6. Skowrońska M, Albrecht J. (Feb 2012). Alterations of blood brain barrier function in hyperammonemia: an overview. Neurotox Res; 21(2):236-44.
  7. Cryan JF, Dinan TG. (Oct. 2012). Mind-altering microorganisms: the impact of the gut microbiota on brain and behaviour. Nat Rev Neurosci; 13(10):701-12.
  8. Sykes MA, Blanchard EB, Lackner J, Keefer L, Krasner S. (Aug. 2003). Psychopathology in irritable bowel syndrome: support for a psychophysiological model. J Behav Med. ; 26(4):361-72.
  9. Lyte, M. (2011) Probiotics function mechanistically as delivery vehicles for neuroactive compounds: microbial endocrinology in the design and use of probiotics. Bioessays 33, 574–581.
  10. Matur, E. & Eraslan, E. (2012). New Advances in the Basic and Clinical Gastroenterology (ed. Brzozowski, T.) (InTech).
  11. Barrett, E., Ross, R. P., O’Toole, P. W., Fitzgerald, G. F. & Stanton, C. (2012) γ-Aminobutyric acid production by culturable bacteria from the human intestine. J. Appl. Microbiol. 113, 411–417
  12. Messaoudi M. et al., (2011), ‘Assessment of psychotropic-like properties of a probiotic formulation (Lactobacillus helveticus R0052 and Bifidobacterium longum R0175) in rats and human subjects’. British Journal of Nutrition, 105(5):755.
  13. Faber, S.M., (2000). ‘Treatment of abnormal gut flora improves symptoms in patients with irritable bowel syndrome’. American Journal of Gastroenterology, 95(9):2533.
  14. Rousseaux C. et al., (2007), ‘Lactobacillus acidophilus modulates intestinal pain and induces opioid and cannabinoid receptors’. Nature Medicine, 13(1):35-7.
  15. Innala, L. et al. (2016). Co-morbidity in patients with early rheumatoid arthritis - inflammation matters. J. Arthritis Res Ther; 18: 33.
  16. Wohleb, E.S, et al. (Jan 2018). Stress-Induced Neuronal Colony Stimulating Factor 1 Provokes Microglia-Mediated Neuronal Remodelling and Depressive-like Behaviour. J. Biological Psychiatry, Volume 83, Issue 1, Pages 38-49.
  17. Xiaojun, Ca. et al (2017). Effect of high dietary fiber low glycemic index diet on intestinal flora, blood glucose and inflammatory response in T2DM patients. Research Article - Biomedical Research; Volume 28, Issue 21.
  18. Burokas, A. et al. (Oct 2017). Targeting the Microbiota-Gut-Brain Axis: Prebiotics Have Anxiolytic and Antidepressant-like Effects and Reverse the Impact of Chronic Stress in Mice. J. Biol Psychiatry. 1; 82(7):472-487.
  19. Tsigalou, C. et al. (2020). Mediterranean Diet as a Tool to Combat Inflammation and Chronic Diseases. An Overview. Biomedicines; 8(7): 201.

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